PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G137900.1
Common NameB456_002G137900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 324aa    MW: 37189 Da    PI: 5.4467
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G137900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.78.9e-08135199650
                         HHHHHHHHHHHHHHHHHHHCTSCC.C......................TTS-STCHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.as...................kapskKlsKaeiLekAveY 50 
                          ++ErrRR+r+N+++  Lr+++Pk +                      + + ++  +iL  +++Y
  Gorai.002G137900.1 135 LMAERRRRKRLNDRLLMLRSVVPKiSKviycknsdfkplitgfishFLSLQQMDRTSILGDTIDY 199
                         589*********************55477777777777777777764444556666666666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.28E-11124215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.236129203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-7135209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-5135199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-12136216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00181249312No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEINEEGLFE ELLDVRGENW DTNPTEMSGI FSNGTWNFDD HKPSSTFLPL PFHQDYTYNF  60
NPIYCPFVDE FSSQSNTFDT PSFPLQQQHD DQESRFLVHQ LHKLDVKATC KTEPVQSPHP  120
DNPAKKLERQ PSKNLMAERR RRKRLNDRLL MLRSVVPKIS KVIYCKNSDF KPLITGFISH  180
FLSLQQMDRT SILGDTIDYT SELLERIKSL QQEVEAGSNM DHIFKGEKPN EMIVRNTPKF  240
EVERRNGDTR IEICCRGDPG LLLSTVSTME ASGLEIQQCV ISCFNDFAMH ASCSEDLEQT  300
TLMRCEDIKK ALFRNAGYGG RCV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137144ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466677.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL13e-65BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0D2NMP00.0A0A0D2NMP0_G
STRINGVIT_18s0001g08040.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2464234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.14e-59beta HLH protein 93
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]